| Identification |
|---|
| HMDB Protein ID
| CDBP03145 |
| Secondary Accession Numbers
| Not Available |
| Name
| Protocadherin gamma-C5 |
| Description
| Not Available |
| Synonyms
|
- PCDH-gamma-C5
|
| Gene Name
| PCDHGC5 |
| Protein Type
| Metal Binding |
| Biological Properties |
|---|
| General Function
| Involved in calcium ion binding |
| Specific Function
| Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain |
| GO Classification
|
| Component |
| membrane |
| cell part |
| plasma membrane |
| Function |
| ion binding |
| cation binding |
| metal ion binding |
| binding |
| calcium ion binding |
| Process |
| cell adhesion |
| cellular process |
| cell-cell adhesion |
| homophilic cell adhesion |
|
| Cellular Location
|
- Cell membrane
- Single-pass type I membrane protein
|
| Pathways
|
Not Available
|
| Gene Properties |
|---|
| Chromosome Location
| Chromosome:5 |
| Locus
| 5q31 |
| SNPs
| PCDHGC5 |
| Gene Sequence
|
>2835 bp
ATGGGGCCCAAGACACTCCCACAGCTCGCTGGGAAATGGCAAGTGCTGTGCATGTTGTCC
TTGTGCTGCTGGGGCTGGGTGTCTGGGCAGCTTCGTTACTCAGTGGTGGAGGAGTCTGAG
CCGGGGACGCTGGTGGGGAATGTTGCTCAGGATCTGGGCTTAAAGATGACAGATCTGTTG
AGCCGGCGGCTGCAATTGGGCTCTGAGGAGAATGGGCGCTATTTTTCCCTGAGCTTGATG
AGTGGTGCCCTGGCAGTGAATCAAAAGATTGACCGAGAAAGCCTATGTGGAGCCAGCACC
AGCTGCCTGCTGCCAGTGCAGGTGGTGACTGAACACCCCCTGGAGCTAATCCGTGTAGAG
GTAGAGATCCTGGATCTCAATGACAACTCTCCTAGCTTTGCCACCCCTGAGCGAGAGATG
CGCATCTCAGAATCAGCAGCATCTGGGGCACGATTCCCACTGGACAGTGCCCAGGATCCG
GATGTGGGCACCAATACTGTGAGCTTTTACACTCTAAGCCCCAACAGCCACTTCTCTCTG
AATGTGAAGACCCTAAAAGATGGGAAGCCATTCCCAGAGCTGGTGCTAGAGCAGCAGCTG
GATCGTGAAGCCCAGGCAAGACATCAGCTGGTGCTTACTGCTGTGGATGGGGGGACCCCA
GCCCGCTCAGGGACCACCCTTATCTCTGTCATCGTGCTGGACATCAATGATAATGCTCCA
ACCTTCCAATCCTCAGTTCTACGTGTGGGAATCCCAGAGAATGCACCCATTGGTACTCTG
CTGCTCCGCCTCAATGCCACTGATCCAGACGAGGGCACCAACGGCCAACTAGACTATTCT
TTTGGAGACCACACATCTGAGGCAGTGCGGAACCTCTTTGGCCTAGACCCTAGCAGTGGG
GCAATCCATGTGTTGGGTCCCATAGACTTTGAGGAGTCACGTTTCTATGAAATTCATGCA
AGAGCCCGTGACCAGGGACAGCCTGCCATGGAGGGCCACTGTGTGATTCAAGTGGATGTG
GGGGATGTCAATGACAATGCCCCAGAGGTGCTATTGGCCTCTTTGGCCAACCCTGTCCTA
GAGAGCACACCAGTGGGCACAGTAGTGGGGTTGTTTAATGTGCGAGACCGGGACTCAGGT
AGAAATGGTGAAGTGAGCCTTGATATCTCTCCGGACCTGCCATTTCAGATTAAGCCTTCT
GAGAACCACTACTCGCTGCTAACCAGCCAGCCTTTGGACCGGGAGGCCACATCCCACTAT
ATCATCGAGCTGCTGGCCAGCGATGCTGGTTCACCTTCCCTACACAAACATCTCACCATC
AGGCTCAACATTTCAGATGTCAATGACAATGCACCCCGCTTCAACCAGCAGCTTTACACT
GCTTACATCCTAGAAAACCGGCCTCCGGGCTCCCTTCTTTGCACTGTGGCTGCCTCAGAT
CCAGACACTGGGGATAATGCCCGCCTCACCTACTCCATTGTAGGAAATCAGGTTCAGGGA
GCCCCAGCCTCCTCCTTTGTGTATGTCAACCCAGAGGATGGACGGATCTTTGCCCAGCGT
ACCTTTGACTATGAATTGCTGCAGATGCTGCAGATTGTGGTGGGGGTTCGAGACTCCGGC
TCTCCCCCATTGCATGCCAACACATCTCTGCATGTGTTTGTCCTAGACGAGAATGATAAT
GCCCCAGCTGTGCTGCACCCACGGCCAGACTGGGAACACTCAGCCCCCCAGCGTCTCCCT
CGCTCTGCTCCTCCTGGCTCCTTGGTCACCAAGGTGACAGCCGTGGATGCTGATGCAGGC
CACAATGCGTGGCTCTCCTACTCACTGTTGCCACAGTCCACAGCCCCAGGACTGTTCCTC
GTGTCTACACACACTGGTGAGGTGCGCACAGCCCGGGCCTTACTGGAGGATGACTCTGAC
ACCCAGCAGGTGGTGGTCCTGGTGAGGGACAATGGTGACCCTTCACTCTCCTCCACAGCC
ACAGTGCTGCTGGTTCTGGAGGATGAGGACCCTGAGGAAATGCCCAAATCCAGTGACTTC
CTCATACACCCTCCTGAGCGTTCAGACCTTACCCTTTACCTCATTGTGGCTCTAGCGACC
GTCAGTCTCTTATCCCTAGTCACCTTCACCTTTCTGTCAGCGAAGTGCCTTCAGGGAAAC
GCAGACGGGGACGGGGGTGGAGGGCAGTGCTGCAGGCGCCAGGACTCACCCTCCCCGGAC
TTCTATAAGCAGTCCAGCCCCAACCTGCAGGTGAGCTCGGACGGCACGCTCAAGTACATG
GAGGTGACGCTGCGGCCCACAGACTCGCAGAGCCACTGCTACAGGACGTGCTTTTCACCG
GCCTCGGACGGCAGTGACTTCACTTTTCTAAGACCCCTCAGCGTTCAGCAGCCCACAGCT
CTGGCGCTGGAGCCTGACGCCATCCGGTCCCGCTCTAATACGCTGCGGGAGCGGAGCCAG
CAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGC
TCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACAGAGATGCTG
CAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACCCTGGGAGGG
GGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGTG
CCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCT
GGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAG
AAGGAGAAGAAGTAA
|
| Protein Properties |
|---|
| Number of Residues
| 944 |
| Molecular Weight
| 101919.7 |
| Theoretical pI
| 4.63 |
| Pfam Domain Function
|
|
| Signals
|
|
|
Transmembrane Regions
|
|
| Protein Sequence
|
>Protocadherin gamma-C5
MGPKTLPQLAGKWQVLCMLSLCCWGWVSGQLRYSVVEESEPGTLVGNVAQDLGLKMTDLL
SRRLQLGSEENGRYFSLSLMSGALAVNQKIDRESLCGASTSCLLPVQVVTEHPLELIRVE
VEILDLNDNSPSFATPEREMRISESAASGARFPLDSAQDPDVGTNTVSFYTLSPNSHFSL
NVKTLKDGKPFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAP
TFQSSVLRVGIPENAPIGTLLLRLNATDPDEGTNGQLDYSFGDHTSEAVRNLFGLDPSSG
AIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVL
ESTPVGTVVGLFNVRDRDSGRNGEVSLDISPDLPFQIKPSENHYSLLTSQPLDREATSHY
IIELLASDAGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASD
PDTGDNARLTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSG
SPPLHANTSLHVFVLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDADAG
HNAWLSYSLLPQSTAPGLFLVSTHTGEVRTARALLEDDSDTQQVVVLVRDNGDPSLSSTA
TVLLVLEDEDPEEMPKSSDFLIHPPERSDLTLYLIVALATVSLLSLVTFTFLSAKCLQGN
ADGDGGGGQCCRRQDSPSPDFYKQSSPNLQVSSDGTLKYMEVTLRPTDSQSHCYRTCFSP
ASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNTLRERSQQAPPNTDWRFSQAQRPGTSG
SQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHV
PDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
|
| External Links |
|---|
| GenBank ID Protein
| 5456984 |
| UniProtKB/Swiss-Prot ID
| Q9Y5F6 |
| UniProtKB/Swiss-Prot Entry Name
| PCDGM_HUMAN |
| PDB IDs
|
Not Available |
| GenBank Gene ID
| AF152339 |
| GeneCard ID
| PCDHGC5 |
| GenAtlas ID
| PCDHGC5 |
| HGNC ID
| HGNC:8718 |
| References |
|---|
| General References
| Not Available |