| Identification |
|---|
| HMDB Protein ID
| CDBP03113 |
| Secondary Accession Numbers
| Not Available |
| Name
| Protocadherin beta-9 |
| Description
| Not Available |
| Synonyms
|
- PCDH-beta-9
- Protocadherin-3H
|
| Gene Name
| PCDHB9 |
| Protein Type
| Metal Binding |
| Biological Properties |
|---|
| General Function
| Involved in calcium ion binding |
| Specific Function
| Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain |
| GO Classification
|
| Component |
| membrane |
| cell part |
| plasma membrane |
| Function |
| ion binding |
| cation binding |
| metal ion binding |
| binding |
| calcium ion binding |
| Process |
| cell adhesion |
| cellular process |
| cell-cell adhesion |
| homophilic cell adhesion |
|
| Cellular Location
|
- Cell membrane
- Single-pass type I membrane protein
|
| Pathways
|
Not Available
|
| Gene Properties |
|---|
| Chromosome Location
| Chromosome:5 |
| Locus
| 5q31 |
| SNPs
| PCDHB9 |
| Gene Sequence
|
>2394 bp
ATGAAGACCAGGGGGTTCAGCTTTCCAAGACAAAGGCAAGTCCTGTTTCTTTTTCTTTTC
TGGGGAGTGTCCTTGGCAGGTTCTGGGTTTGGACGTTATTCGGTGACTGAGGAAACAGAG
AAAGGATCCTTTGTGGTCAATCTGGCAAAGGATCTGGGACTAGCAGAGGGGGAGCTGGCT
GCAAGGGGAACCAGGGTGGTTTCCGATGATAACAAACAATACCTGCTCCTGGATTCACAT
ACCGGGAATTTGCTCACAAATGAGAAACTGGACCGAGAGAAGCTGTGTGGCCCTAAAGAG
CCCTGTATGCTGTATTTCCAAATTTTAATGGATGATCCCTTTCAGATTTACCGGGCTGAG
CTGAGAGTCAGGGATATAAATGATCACTCGCCAGTGTTTCGGCACAAAGAGATGGTCTTA
AAAATATCAGAAAATACAGCTGAAGGGACAGCATTTAGACTAGAAAGAGCACAGGATCCA
GATGAAGGTCATAACAGTATCCAAAACTACACGATCAGCTCCAACTCTTTTTTCCATATT
AAAATTAGTGGCAGTGATGAAGGCATGATATATCCAGAGCTAGTGTTGGACAAAGCACTG
GATCGGGAGGAGCAGGAAGAGCTCAGCTTAACCCTCACAGCGCTGGATGGTGGGTCTCCA
TCCAGGTCTGGGACCTCCACTATACGCATTGTGGTCTTGGATGTCAATGACAATGCCCCA
CAGTTTGCCCAGGCTCTGTATGAGACCCAGGCTCCAGAAAACAGTCCAGTAGGGTCCCTT
ATTGTTAAAGTGTCTGCAGGAGATGCAGACTCAGGAGTCAATGCAGAAGTATCCTATTCA
TTTTTTGATGCTTCTGAAGATATTTTAACAACGTTTCAAATCAATCCTTTTTCTGGGGAA
ATCTTTCTCAGAGAATTGCTTGATTATGAGTTAGTAAATTCTTACAAAATAAATATACAG
GCAATGGACGGCGGAGGCCTTTCTGCAAGATGTACAGTTTTGATAAAAGTATTAGATTCC
AATGACAATCCTCCTGAACTGATCATATCATCACTTTCCAACTCTGTTGCTGAAAACTCT
CCTGGGATAGTATTGGCTGTTTTTAAGATTAAAGACAGAGACTCCGGAGAAAATGGAAAG
ACAATTTGCTATGTTCAAGATAATCTGCCTTTTTTTCTGAAACCGTCTGTTGACAATTTT
TACATCCTAATGACTGAAGGTGCACTGGACAGAGAGAGCAAAGCTGAGTACAACATCACC
ATCACCGTCACTGACTTGGGGACACCCAGGCTGAAAACCGAGCACAGCATAACCCTGCAG
GTCTCCGACGTCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTC
CGGGAGAACAACAGCCCCGCCCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCA
GGCACCAACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCAGGACCCACACCTGCCCCTC
GCCTCCCTGGTCTCCATCAACGCGGACAATGGCCACCTGTTTGCCCTCAGGTCGCTGGAC
TACGAGGCCCTGCAGGCTTTCGACTTCCGCGTGGGCGCCTCAGACCGCGGCTCCCCGGCT
TTGAGCAGCGAGGCGCTGGTGCGCGTACTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCC
GAGCCGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCC
TGGCTGTCGTACCAGCTGCTCAAGGCCACGGAGCCCGGGCTGTTCGGTGTGTGGGCGCAC
AATGGGGAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGCGACGCAGCCAAGCACAGGCTG
GTGGTGCTTGTCAAGGACAATGGCGAGCCTCCTCGCTCGGCCACCGCCACGCTGCACGTG
CTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCGGAGGCGGCCCCGGCCCAG
GCCCAGGCCGACTTGCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCTTCGCTC
TTCCTCCTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCC
TCGGTGGGTCGCTGCTCGGTGCCCGAGGGTCCTTTTCCAGGGCATCTGGTGGACGTGAGC
GGCACCGGGACCCTGTTCCAGAGCTACCAGTACGAGGTGTGTCTGACTGGAGGTTCAGAG
ACCGGCGAGTTCAAGTTCTTGAAGCCGATTACCCCCCACCTCCCGCCCCATAGGGGTGGG
AAAGAAATAGAGGAAAATTCTACTCTCCCCAATAGCTTTGGATTTAATTATTGA
|
| Protein Properties |
|---|
| Number of Residues
| 797 |
| Molecular Weight
| 87098.2 |
| Theoretical pI
| 4.64 |
| Pfam Domain Function
|
|
| Signals
|
|
|
Transmembrane Regions
|
|
| Protein Sequence
|
>Protocadherin beta-9
MKTRGFSFPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELA
ARGTRVVSDDNKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAE
LRVRDINDHSPVFRHKEMVLKISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHI
KISGSDEGMIYPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAP
QFAQALYETQAPENSPVGSLIVKVSAGDADSGVNAEVSYSFFDASEDILTTFQINPFSGE
IFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLSNSVAENS
PGIVLAVFKIKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNIT
ITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDS
GTNAQVTYSLLPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPA
LSSEALVRVLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNA
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHV
LLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSLFLLSVLLFVAVRLCRRSRAA
SVGRCSVPEGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPITPHLPPHRGG
KEIEENSTLPNSFGFNY
|
| External Links |
|---|
| GenBank ID Protein
| 11142065 |
| UniProtKB/Swiss-Prot ID
| Q9Y5E1 |
| UniProtKB/Swiss-Prot Entry Name
| PCDB9_HUMAN |
| PDB IDs
|
Not Available |
| GenBank Gene ID
| AF152502 |
| GeneCard ID
| PCDHB9 |
| GenAtlas ID
| PCDHB9 |
| HGNC ID
| HGNC:8694 |
| References |
|---|
| General References
| Not Available |