Cannabis Compound Database: Showing Protein Peptide deformylase, mitochondrial (CDBP01051)

Identification Biological properties Gene properties Protein properties External links References XML Show 2 compounds

Identification

HMDB Protein ID

CDBP01051

Secondary Accession Numbers

Not Available

Name

Peptide deformylase, mitochondrial

Description

Not Available

Synonyms

Polypeptide deformylase

Gene Name

PDF

Protein Type

Enzyme

Biological Properties

General Function

Involved in iron ion binding

Specific Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins (By similarity).

GO Classification

Biological Process
translation
positive regulation of cell proliferation
N-terminal protein amino acid modification
peptidyl-methionine modification
Cellular Component
mitochondrion
Function
ion binding
cation binding
metal ion binding
binding
catalytic activity
hydrolase activity
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
transition metal ion binding
iron ion binding
peptide deformylase activity
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
Molecular Function
iron ion binding
peptide deformylase activity
Process
macromolecule biosynthetic process
cellular macromolecule biosynthetic process
translation
metabolic process
biosynthetic process

Cellular Location

Mitochondrion (Potential)

Pathways

Not Available

Gene Properties

Chromosome Location

Locus

16q22.1

SNPs

PDF

Gene Sequence

>732 bp
ATGGCCCGGCTGTGGGGCGCGCTGAGTCTTTGGCCACTGTGGGCGGCCGTGCCGTGGGGC
GGGGCGGCAGCCGTCGGTGTCCGGGCTTGCAGCTCCACGGCCGCCCCGGACGGCGTCGAG
GGCCCGGCGCTGCGGCGCTCCTATTGGCGCCACCTGAGGCGTCTGGTGCTGGGTCCTCCC
GAACCGCCGTTCTCGCACGTGTGCCAAGTCGGGGACCCGGTGCTGCGCGGCGTGGCGGCC
CCGGTGGAGCGGGCGCAGCTAGGCGGGCCCGAGCTGCAGCGGCTGACGCAACGGCTGGTC
CAGGTGATGCGGCGGCGGCGCTGCGTGGGCCTAAGCGCGCCGCAGCTGGGGGTGCCGCGG
CAGGTGCTGGCGCTGGAGCTCCCCGAGGCGCTGTGTCGGGAGTGCCCGCCCCGCCAGCGC
GCGCTCCGCCAAATGGAGCCCTTCCCCCTGCGCGTGTTCGTGAACCCCAGCCTGCGAGTG
CTTGACAGCCGCCTGGTCACCTTTCCCGAGGGCTGCGAGAGCGTCGCCGGCTTCCTGGCC
TGCGTGCCCCGCTTCCAGGCGGTGCAGATCTCAGGGCTGGACCCCAATGGAGAACAGGTG
GTGTGGCAGGCGAGCGGGTGGGCAGCCCGCATCATCCAGCACGAGATGGACCACCTGCAG
GGCTGCCTGTTTATTGACAAAATGGACAGCAGGACGTTCACAAACGTCTATTGGATGAAG
GTGAATGACTAA

Protein Properties

Number of Residues

243

Molecular Weight

27013.25

Theoretical pI

9.152

Pfam Domain Function

Pep_deformylase (PF01327 )

Signals

Not Available

Transmembrane Regions

Not Available

Protein Sequence

>Peptide deformylase, mitochondrial
MARLWGALSLWPLWAAVPWGGAAAVGVRACSSTAAPDGVEGPALRRSYWRHLRRLVLGPP
EPPFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPR
QVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLA
CVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYWMK
VND

External Links

GenBank ID Protein

Not Available

UniProtKB/Swiss-Prot ID

Q9HBH1

UniProtKB/Swiss-Prot Entry Name

DEFM_HUMAN

PDB IDs